Package: breakaway
Title: Species Richness Estimation and Modeling
Version: 5.0.1
Date: 2022-11-17
Authors@R: c(
    person("Amy D", "Willis", email = "adwillis@uw.edu", role = c("aut", "cre")),
    person("Bryan D", "Martin", role = "aut"),
    person("Pauline", "Trinh", role = "aut"),
    person("Sarah", "Teichman", role = "aut"),
    person("David", "Clausen", role = "aut"),
    person("Kathryn", "Barger", role = "aut"),
    person("John", "Bunge", role = "aut")
  )
Description: Understanding the drivers of microbial diversity is an
        important frontier of microbial ecology, and investigating the
        diversity of samples from microbial ecosystems is a common step
        in any microbiome analysis. 'breakaway' is the premier package
        for statistical analysis of microbial diversity. 'breakaway'
        implements the latest and greatest estimates of species
        richness, described in Willis and Bunge (2015)
        <doi:10.1111/biom.12332>, Willis et al. (2017)
        <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>,
        as well as the most commonly used estimates, including the
        objective Bayes approach described in Barger and Bunge (2010)
        <doi:10.1214/10-BA527>.
License: GPL-2
BugReports: https://github.com/adw96/breakaway/issues
LazyData: true
Depends: R (>= 3.5.0)
Imports: ggplot2, graphics, lme4, magrittr, MASS, phyloseq, reformulas,
        stats, tibble, utils
Suggests: devtools, knitr, plyr, RCurl, rmarkdown, testthat, dplyr
VignetteBuilder: knitr
URL: https://adw96.github.io/breakaway/
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
        zlib1g-dev
Repository: https://adw96.r-universe.dev
Date/Publication: 2026-06-25 23:45:45 UTC
RemoteUrl: https://github.com/adw96/breakaway
RemoteRef: HEAD
RemoteSha: 35f83d47f1fe8b4d4c18ef47af5e46ac4f1669a9
NeedsCompilation: no
Packaged: 2026-06-26 02:57:55 UTC; root
Author: Amy D Willis [aut, cre],
  Bryan D Martin [aut],
  Pauline Trinh [aut],
  Sarah Teichman [aut],
  David Clausen [aut],
  Kathryn Barger [aut],
  John Bunge [aut]
Maintainer: Amy D Willis <adwillis@uw.edu>